IL_7S9U_079

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S9U_079 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.1163

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

7S9U|1|A|U|2872
7S9U|1|A|G|2873
7S9U|1|A|G|2874
7S9U|1|A|A|2875
7S9U|1|A|A|2876
7S9U|1|A|G|2877
*
7S9U|1|A|U|2890
7S9U|1|A|G|2891
7S9U|1|A|G|2892
7S9U|1|A|A|2893
7S9U|1|A|G|2894

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19