IL_7S9U_093

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAGGG*CGCUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7S9U_093 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.2839

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7S9U|1|A|A|1243
7S9U|1|A|A|1244
7S9U|1|A|G|1245
7S9U|1|A|G|1246
7S9U|1|A|G|1247
*
7S9U|1|A|C|1279
7S9U|1|A|G|1280
7S9U|1|A|C|1281
7S9U|1|A|U|1282
7S9U|1|A|U|1283

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15