IL_7SA4_049

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SA4_049 not in the Motif Atlas

Geometric match to IL_5J7L_293

Geometric discrepancy: 0.0796

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7SA4|1|1|C|1357
7SA4|1|1|G|1358
7SA4|1|1|A|1359
7SA4|1|1|G|1360
7SA4|1|1|G|1361
*
7SA4|1|1|C|1370
7SA4|1|1|G|1371
7SA4|1|1|U|1372
7SA4|1|1|A|1373
7SA4|1|1|G|1374

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain X

50S ribosomal protein L28

Chain d

50S ribosomal protein L34