IL_7SA4_065

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

7SA4|1|1|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SA4_065 not in the Motif Atlas

Geometric match to IL_5J7L_309

Geometric discrepancy: 0.1022

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7SA4|1|1|U|1712
7SA4|1|1|A|1713
7SA4|1|1|U|1714
7SA4|1|1|G|1715
7SA4|1|1|U|1716
7SA4|1|1|A|1717
7SA4|1|1|G|1718
*
7SA4|1|1|U|1742
7SA4|1|1|G|1743
7SA4|1|1|A|1744
7SA4|1|1|A|1745
7SA4|1|1|A|1746

Current chains

Chain 1

23S ribosomal RNA

Nearby chains