IL_7SA4_077

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CCC*G(2MG)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SA4_077 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.1221

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

7SA4|1|1|C|2064
7SA4|1|1|C|2065
7SA4|1|1|C|2066
*
7SA4|1|1|G|2444
7SA4|1|1|2MG|2445
7SA4|1|1|G|2446

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain D

50S ribosomal protein L4

Chain L

50S ribosomal protein L15