IL_7SA4_086

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7SA4|1|1|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SA4_086 not in the Motif Atlas

Geometric match to IL_5J7L_330

Geometric discrepancy: 0.3296

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7SA4|1|1|C|2129
7SA4|1|1|U|2130
7SA4|1|1|U|2131
7SA4|1|1|U|2132
7SA4|1|1|G|2133
7SA4|1|1|A|2134
7SA4|1|1|A|2135
7SA4|1|1|G|2136
*
7SA4|1|1|U|2155
7SA4|1|1|G|2156
7SA4|1|1|G|2157
7SA4|1|1|A|2158
7SA4|1|1|G|2159

Current chains

Chain 1

23S ribosomal RNA

Nearby chains