3D structure

PDB id
7SA4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Damaged 70S ribosome with PrfH bound
Experimental method
ELECTRON MICROSCOPY
Resolution
2.55 Å

Loop

Sequence
CGAG*CGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7SA4_088 not in the Motif Atlas
Geometric match to IL_5J7L_333
Geometric discrepancy: 0.0562
The information below is about IL_5J7L_333
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.15
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

7SA4|1|1|C|2350
7SA4|1|1|G|2351
7SA4|1|1|A|2352
7SA4|1|1|G|2353
*
7SA4|1|1|C|2364
7SA4|1|1|G|2365
7SA4|1|1|A|2366
7SA4|1|1|G|2367

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain O
50S ribosomal protein L18
Chain W
50S ribosomal protein L27
Chain e
50S ribosomal protein L35

Coloring options:


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