IL_7SA4_169
3D structure
- PDB id
- 7SA4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Damaged 70S ribosome with PrfH bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- GU(5MC)AC*GA(A3P)GUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MC, A3P
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SA4_169 not in the Motif Atlas
- Homologous match to IL_6CZR_167
- Geometric discrepancy: 0.3521
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
7SA4|1|2|G|1405
7SA4|1|2|U|1406
7SA4|1|2|5MC|1407
7SA4|1|2|A|1408
7SA4|1|2|C|1409
*
7SA4|1|2|G|1491
7SA4|1|2|A|1492
7SA4|1|2|A3P|1493
7SA4|1|2|G|1494
7SA4|1|2|U|1495
7SA4|1|2|C|1496
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 5
- Transfer RNA; tRNA
- Chain 7
- mRNA
- Chain 8
- Peptide chain release factor H
- Chain q
- 30S ribosomal protein S12
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