IL_7SAE_008

3D structure

PDB id

7SAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR70P Class1 ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SAE_008 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.1076

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

7SAE|1|A|C|241
7SAE|1|A|U|242
7SAE|1|A|G|243
7SAE|1|A|A|244
7SAE|1|A|G|245
7SAE|1|A|U|246
7SAE|1|A|A|247
7SAE|1|A|G|248
*
7SAE|1|A|C|256
7SAE|1|A|G|257
7SAE|1|A|A|258
7SAE|1|A|A|259
7SAE|1|A|A|260
7SAE|1|A|C|261
7SAE|1|A|G|262

Current chains

Chain A

RNA (2434-MER)

Nearby chains

Chain L

50S ribosomal protein L15