IL_7SAE_029

3D structure

PDB id

7SAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR70P Class1 ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGGUAG*CGAAUGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SAE_029 not in the Motif Atlas

Homologous match to IL_4WF9_031

Geometric discrepancy: 0.0937

The information below is about IL_4WF9_031

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_94128.1

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7SAE|1|A|G|903
7SAE|1|A|A|904
7SAE|1|A|G|905
7SAE|1|A|G|906
7SAE|1|A|U|907
7SAE|1|A|A|908
7SAE|1|A|G|909
*
7SAE|1|A|C|962
7SAE|1|A|G|963
7SAE|1|A|A|964
7SAE|1|A|A|965
7SAE|1|A|U|966
7SAE|1|A|G|967
7SAE|1|A|C|968

Current chains

Chain A

RNA (2434-MER)

Nearby chains

Chain V

50S ribosomal protein L27

Chain Z

50S ribosomal protein L30