IL_7SFR_015

3D structure

PDB id

7SFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmethylated Mtb Ribosome 50S with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUAC*GAGUGAAAGAGUAC

Length

18 nucleotides

Bulged bases

7SFR|1|A|G|592, 7SFR|1|A|A|596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SFR_015 not in the Motif Atlas

Geometric match to IL_5TBW_014

Geometric discrepancy: 0.1077

The information below is about IL_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

7SFR|1|A|G|570
7SFR|1|A|U|571
7SFR|1|A|A|572
7SFR|1|A|C|573
*
7SFR|1|A|G|584
7SFR|1|A|A|585
7SFR|1|A|G|586
7SFR|1|A|U|587
7SFR|1|A|G|588
7SFR|1|A|A|589
7SFR|1|A|A|590
7SFR|1|A|A|591
7SFR|1|A|G|592
7SFR|1|A|A|593
7SFR|1|A|G|594
7SFR|1|A|U|595
7SFR|1|A|A|596
7SFR|1|A|C|597

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain U

50S ribosomal protein L24