IL_7SFR_084
3D structure
- PDB id
- 7SFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unmethylated Mtb Ribosome 50S with SEQ-9
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 7SFR|1|A|A|2176, 7SFR|1|A|U|2182, 7SFR|1|A|U|2201
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SFR_084 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1173
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
7SFR|1|A|C|2172
7SFR|1|A|G|2173
7SFR|1|A|A|2174
7SFR|1|A|A|2175
7SFR|1|A|A|2176
7SFR|1|A|5MU|2177
7SFR|1|A|U|2178
7SFR|1|A|C|2179
7SFR|1|A|C|2180
7SFR|1|A|U|2181
7SFR|1|A|U|2182
7SFR|1|A|G|2183
*
7SFR|1|A|C|2199
7SFR|1|A|C|2200
7SFR|1|A|U|2201
7SFR|1|A|G|2202
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: