IL_7SFR_110

3D structure

PDB id

7SFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmethylated Mtb Ribosome 50S with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

7SFR|1|A|G|3114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SFR_110 not in the Motif Atlas

Geometric match to IL_7A0S_099

Geometric discrepancy: 0.1715

The information below is about IL_7A0S_099

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_28408.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

77

Unit IDs

7SFR|1|A|G|3073
7SFR|1|A|G|3074
*
7SFR|1|A|U|3113
7SFR|1|A|G|3114
7SFR|1|A|C|3115

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17