IL_7SFR_175

3D structure

PDB id

7SFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmethylated Mtb Ribosome 50S with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAUG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SFR_175 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.316

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7SFR|1|a|C|1251
7SFR|1|a|G|1252
7SFR|1|a|A|1253
7SFR|1|a|U|1254
7SFR|1|a|G|1255
*
7SFR|1|a|U|1264
7SFR|1|a|U|1265
7SFR|1|a|A|1266
7SFR|1|a|A|1267
7SFR|1|a|G|1268

Current chains

Chain a

16S rRNA

Nearby chains

Chain s

30S ribosomal protein S19