IL_7SS9_009

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3382

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7SS9|1|1|C|274
7SS9|1|1|C|275
7SS9|1|1|U|276
7SS9|1|1|G|277
7SS9|1|1|A|278
7SS9|1|1|A|279
7SS9|1|1|U|280
7SS9|1|1|C|281
*
7SS9|1|1|G|359
7SS9|1|1|U|360
7SS9|1|1|G|361
7SS9|1|1|A|362
7SS9|1|1|G|363

Current chains

Chain 1

23S rRNA

Nearby chains