IL_7SS9_053

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAG*UGAUGA

Length

11 nucleotides

Bulged bases

7SS9|1|1|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_053 not in the Motif Atlas

Geometric match to IL_4V9F_056

Geometric discrepancy: 0.3847

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

7SS9|1|1|U|1467
7SS9|1|1|U|1468
7SS9|1|1|A|1469
7SS9|1|1|A|1470
7SS9|1|1|G|1471
*
7SS9|1|1|U|1520
7SS9|1|1|G|1521
7SS9|1|1|A|1522
7SS9|1|1|U|1523
7SS9|1|1|G|1524
7SS9|1|1|A|1525

Current chains

Chain 1

23S rRNA

Nearby chains