IL_7SS9_062

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

7SS9|1|1|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_062 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.2226

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7SS9|1|1|U|1712
7SS9|1|1|A|1713
7SS9|1|1|U|1714
7SS9|1|1|G|1715
7SS9|1|1|U|1716
7SS9|1|1|A|1717
7SS9|1|1|G|1718
*
7SS9|1|1|U|1742
7SS9|1|1|G|1743
7SS9|1|1|A|1744
7SS9|1|1|A|1745
7SS9|1|1|A|1746

Current chains

Chain 1

23S rRNA

Nearby chains