IL_7SS9_063

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGAGG*UGGAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_063 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2895

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7SS9|1|1|G|1719
7SS9|1|1|U|1720
7SS9|1|1|G|1721
7SS9|1|1|A|1722
7SS9|1|1|G|1723
7SS9|1|1|G|1724
*
7SS9|1|1|U|1736
7SS9|1|1|G|1737
7SS9|1|1|G|1738
7SS9|1|1|A|1739
7SS9|1|1|G|1740
7SS9|1|1|C|1741

Current chains

Chain 1

23S rRNA

Nearby chains