IL_7SS9_108

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUAAC*GGG

Length

9 nucleotides

Bulged bases

7SS9|1|3|C|48, 7SS9|1|3|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_108 not in the Motif Atlas

Geometric match to IL_6CZR_115

Geometric discrepancy: 0.1991

The information below is about IL_6CZR_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

3

Unit IDs

7SS9|1|3|C|47
7SS9|1|3|C|48
7SS9|1|3|U|49
7SS9|1|3|A|50
7SS9|1|3|A|51
7SS9|1|3|C|52
*
7SS9|1|3|G|359
7SS9|1|3|G|360
7SS9|1|3|G|361

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 8

Elongation factor G

Chain Q

30S ribosomal protein S12