IL_7SS9_123

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

7SS9|1|3|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_123 not in the Motif Atlas

Geometric match to IL_4LFB_016

Geometric discrepancy: 0.3023

The information below is about IL_4LFB_016

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

7SS9|1|3|U|375
7SS9|1|3|G|376
*
7SS9|1|3|U|387
7SS9|1|3|G|388
7SS9|1|3|A|389

Current chains

Chain 3

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16