IL_7SS9_152

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

7SS9|1|3|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_152 not in the Motif Atlas

Geometric match to IL_5J7L_049

Geometric discrepancy: 0.2853

The information below is about IL_5J7L_049

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

7SS9|1|3|U|1060
7SS9|1|3|G|1061
*
7SS9|1|3|C|1195
7SS9|1|3|A|1196
7SS9|1|3|A|1197

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain 8

Elongation factor G

Chain H

30S ribosomal protein S3

Chain O

30S ribosomal protein S10

Chain S

30S ribosomal protein S14