IL_7SS9_171

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGAAG*UGGAGGA

Length

13 nucleotides

Bulged bases

7SS9|1|1|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_171 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.3012

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7SS9|1|1|U|702
7SS9|1|1|U|703
7SS9|1|1|G|704
7SS9|1|1|A|705
7SS9|1|1|A|706
7SS9|1|1|G|707
*
7SS9|1|1|U|724
7SS9|1|1|G|725
7SS9|1|1|G|726
7SS9|1|1|A|727
7SS9|1|1|G|728
7SS9|1|1|G|729
7SS9|1|1|A|730

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2