IL_7SS9_172

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

7SS9|1|1|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_172 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.2821

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

7SS9|1|1|A|844
7SS9|1|1|A|845
7SS9|1|1|U|846
7SS9|1|1|U|847
7SS9|1|1|C|848
*
7SS9|1|1|G|930
7SS9|1|1|U|931
7SS9|1|1|U|932
7SS9|1|1|A|933
7SS9|1|1|U|934

Current chains

Chain 1

23S rRNA

Nearby chains

Chain z

50S ribosomal protein L30