Loop IL_7SS9

3D structure

PDB id: 7SS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Late translocation intermediate with EF-G partially dissociated (Structure V)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

Loop

Sequence: GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAA*UCAC
Length: 40 nucleotides
Bulged bases: 7SS9|1|1|U|1061, 7SS9|1|1|U|1066, 7SS9|1|1|A|1069, 7SS9|1|1|A|1070, 7SS9|1|1|U|1078
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7SS9|1|1|G|1055
7SS9|1|1|G|1056
7SS9|1|1|A|1057
7SS9|1|1|U|1058
7SS9|1|1|G|1059
7SS9|1|1|U|1060
7SS9|1|1|U|1061
7SS9|1|1|G|1062
7SS9|1|1|G|1063
7SS9|1|1|C|1064
7SS9|1|1|U|1065
7SS9|1|1|U|1066
7SS9|1|1|A|1067
7SS9|1|1|G|1068
7SS9|1|1|A|1069
7SS9|1|1|A|1070
7SS9|1|1|G|1071
7SS9|1|1|C|1072
7SS9|1|1|A|1073
7SS9|1|1|G|1074
7SS9|1|1|C|1075
7SS9|1|1|C|1076
7SS9|1|1|A|1077
7SS9|1|1|U|1078
7SS9|1|1|C|1079
7SS9|1|1|A|1080
7SS9|1|1|U|1081
7SS9|1|1|U|1082
7SS9|1|1|U|1083
7SS9|1|1|A|1084
7SS9|1|1|A|1085
7SS9|1|1|A|1086
7SS9|1|1|G|1087
7SS9|1|1|A|1088
7SS9|1|1|A|1089
7SS9|1|1|A|1090
*
7SS9|1|1|U|1101
7SS9|1|1|C|1102
7SS9|1|1|A|1103
7SS9|1|1|C|1104

Current chains

Chain 1: 23S rRNA

Nearby chains

Chain 8: Elongation factor G
Chain F: 50S ribosomal protein L36
Chain f: 50S ribosomal protein L6
Chain i: 50S ribosomal protein L11
Chain m: 50S ribosomal protein L16

IL_7SS9_175