IL_7SS9_177

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAAGC*GUGAUG

Length

11 nucleotides

Bulged bases

7SS9|1|1|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_177 not in the Motif Atlas

Homologous match to IL_4WF9_116

Geometric discrepancy: 0.309

The information below is about IL_4WF9_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25186.4

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

7SS9|1|1|U|1468
7SS9|1|1|A|1469
7SS9|1|1|A|1470
7SS9|1|1|G|1471
7SS9|1|1|C|1472
*
7SS9|1|1|G|1519
7SS9|1|1|U|1520
7SS9|1|1|G|1521
7SS9|1|1|A|1522
7SS9|1|1|U|1523
7SS9|1|1|G|1524

Current chains

Chain 1

23S rRNA

Nearby chains