IL_7SS9_181

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGC*GUAAA

Length

8 nucleotides

Bulged bases

7SS9|1|1|A|1899, 7SS9|1|1|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_181 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2814

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

7SS9|1|1|U|1841
7SS9|1|1|G|1842
7SS9|1|1|C|1843
*
7SS9|1|1|G|1897
7SS9|1|1|U|1898
7SS9|1|1|A|1899
7SS9|1|1|A|1900
7SS9|1|1|A|1901

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2