IL_7SS9_206

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAACA*UGGUAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SS9_206 not in the Motif Atlas

Geometric match to IL_3LQX_002

Geometric discrepancy: 0.29

The information below is about IL_3LQX_002

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7SS9|1|3|C|779
7SS9|1|3|A|780
7SS9|1|3|A|781
7SS9|1|3|A|782
7SS9|1|3|C|783
7SS9|1|3|A|784
*
7SS9|1|3|U|798
7SS9|1|3|G|799
7SS9|1|3|G|800
7SS9|1|3|U|801
7SS9|1|3|A|802
7SS9|1|3|G|803

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain P

30S ribosomal protein S11

Chain Z

30S ribosomal protein S21