IL_7SSD_029

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSD_029 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.1894

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7SSD|1|1|G|875
7SSD|1|1|C|876
7SSD|1|1|A|877
7SSD|1|1|A|878
7SSD|1|1|G|879
*
7SSD|1|1|C|898
7SSD|1|1|A|899
7SSD|1|1|A|900
7SSD|1|1|C|901
7SSD|1|1|C|902

Current chains

Chain 1

23S rRNA

Nearby chains