IL_7SSD_041

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

7SSD|1|1|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSD_041 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.3931

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

7SSD|1|1|G|1087
7SSD|1|1|A|1088
7SSD|1|1|A|1089
7SSD|1|1|A|1090
7SSD|1|1|G|1091
*
7SSD|1|1|C|1100
7SSD|1|1|U|1101
7SSD|1|1|C|1102

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain i

50S ribosomal protein L11