IL_7SSD_063

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7SSD|1|1|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSD_063 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.1377

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7SSD|1|1|C|1686
7SSD|1|1|G|1687
7SSD|1|1|U|1688
7SSD|1|1|A|1689
7SSD|1|1|A|1690
7SSD|1|1|C|1691
*
7SSD|1|1|G|1696
7SSD|1|1|G|1697
7SSD|1|1|A|1698
7SSD|1|1|G|1699
7SSD|1|1|A|1700
7SSD|1|1|A|1701
7SSD|1|1|G|1702

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2