IL_7SSD_086

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

7SSD|1|1|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSD_086 not in the Motif Atlas

Homologous match to IL_5J7L_334

Geometric discrepancy: 0.5197

The information below is about IL_5J7L_334

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7SSD|1|1|U|2401
7SSD|1|1|U|2402
7SSD|1|1|C|2403
*
7SSD|1|1|G|2414
7SSD|1|1|G|2415

Current chains

Chain 1

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L33

Chain E

50S ribosomal protein L35

Chain l

50S ribosomal protein L15