IL_7SSD_093

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

7SSD|1|1|G|2576, 7SSD|1|1|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSD_093 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.1656

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

7SSD|1|1|C|2510
7SSD|1|1|U|2511
7SSD|1|1|C|2512
*
7SSD|1|1|G|2574
7SSD|1|1|C|2575
7SSD|1|1|G|2576
7SSD|1|1|A|2577
7SSD|1|1|G|2578

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain c

50S ribosomal protein L3