IL_7SSD_094

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

7SSD|1|1|A|2572, 7SSD|1|1|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSD_094 not in the Motif Atlas

Homologous match to IL_5J7L_341

Geometric discrepancy: 0.1305

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

7SSD|1|1|C|2512
7SSD|1|1|A|2513
*
7SSD|1|1|U|2571
7SSD|1|1|A|2572
7SSD|1|1|C|2573
7SSD|1|1|G|2574

Current chains

Chain 1

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain j

50S ribosomal protein L13