IL_7SSD_107

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGC*GUAG

Length

7 nucleotides

Bulged bases

7SSD|1|2|A|66

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSD_107 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.3011

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

7SSD|1|2|C|17
7SSD|1|2|G|18
7SSD|1|2|C|19
*
7SSD|1|2|G|64
7SSD|1|2|U|65
7SSD|1|2|A|66
7SSD|1|2|G|67

Current chains

Chain 2

5S RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA