IL_7SSD_113

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AG*CAU

Length

5 nucleotides

Bulged bases

7SSD|1|3|A|397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSD_113 not in the Motif Atlas

Homologous match to IL_4LFB_002

Geometric discrepancy: 0.2738

The information below is about IL_4LFB_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

7SSD|1|3|A|44
7SSD|1|3|G|45
*
7SSD|1|3|C|396
7SSD|1|3|A|397
7SSD|1|3|U|398

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 8

Elongation factor G

Chain U

30S ribosomal protein S16