IL_7SSD_167

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7SSD|1|3|C|1400, 7SSD|1|3|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSD_167 not in the Motif Atlas

Homologous match to IL_6CZR_165

Geometric discrepancy: 0.1785

The information below is about IL_6CZR_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7SSD|1|3|C|1399
7SSD|1|3|C|1400
7SSD|1|3|G|1401
*
7SSD|1|3|C|1501
7SSD|1|3|A|1502
7SSD|1|3|A|1503
7SSD|1|3|G|1504

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 4

mRNA

Chain 5

Transfer RNA; tRNA

Chain 8

Elongation factor G