IL_7SSD_176

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSD_176 not in the Motif Atlas

Homologous match to IL_4WF9_024

Geometric discrepancy: 0.1403

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

7SSD|1|1|U|703
7SSD|1|1|G|704
7SSD|1|1|A|705
7SSD|1|1|A|706
7SSD|1|1|G|707
*
7SSD|1|1|U|724
7SSD|1|1|G|725
7SSD|1|1|G|726
7SSD|1|1|A|727
7SSD|1|1|G|728

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2