IL_7SSD_177

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

7SSD|1|1|U|846, 7SSD|1|1|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSD_177 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.2293

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

7SSD|1|1|A|844
7SSD|1|1|A|845
7SSD|1|1|U|846
7SSD|1|1|U|847
7SSD|1|1|C|848
*
7SSD|1|1|G|930
7SSD|1|1|U|931
7SSD|1|1|U|932
7SSD|1|1|A|933
7SSD|1|1|U|934

Current chains

Chain 1

23S rRNA

Nearby chains

Chain z

50S ribosomal protein L30