3D structure

PDB id
7SSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mid translocation intermediate with EF-G bound with GDP (Structure IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GUGGGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUACCAC
Length
41 nucleotides
Bulged bases
7SSD|1|1|U|2130, 7SSD|1|1|U|2132, 7SSD|1|1|U|2172
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7SSD|1|1|G|2121
7SSD|1|1|U|2122
7SSD|1|1|G|2123
7SSD|1|1|G|2124
7SSD|1|1|G|2125
7SSD|1|1|A|2126
7SSD|1|1|G|2127
7SSD|1|1|G|2128
7SSD|1|1|C|2129
7SSD|1|1|U|2130
7SSD|1|1|U|2131
7SSD|1|1|U|2132
7SSD|1|1|G|2133
7SSD|1|1|A|2134
7SSD|1|1|A|2135
7SSD|1|1|G|2136
7SSD|1|1|U|2137
*
7SSD|1|1|A|2154
7SSD|1|1|U|2155
7SSD|1|1|G|2156
7SSD|1|1|G|2157
7SSD|1|1|A|2158
7SSD|1|1|G|2159
7SSD|1|1|C|2160
7SSD|1|1|C|2161
7SSD|1|1|G|2162
7SSD|1|1|A|2163
7SSD|1|1|C|2164
7SSD|1|1|C|2165
7SSD|1|1|U|2166
7SSD|1|1|U|2167
7SSD|1|1|G|2168
7SSD|1|1|A|2169
7SSD|1|1|A|2170
7SSD|1|1|A|2171
7SSD|1|1|U|2172
7SSD|1|1|A|2173
7SSD|1|1|C|2174
7SSD|1|1|C|2175
7SSD|1|1|A|2176
7SSD|1|1|C|2177

Current chains

Chain 1
23S rRNA

Nearby chains

Chain 6
Transfer RNA; tRNA
Chain a
50S ribosomal protein L1

Coloring options:

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