IL_7SSD_190
3D structure
- PDB id
- 7SSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mid translocation intermediate with EF-G bound with GDP (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAAU*GGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SSD_190 not in the Motif Atlas
- Homologous match to IL_6CZR_409
- Geometric discrepancy: 0.1519
- The information below is about IL_6CZR_409
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
7SSD|1|3|A|673
7SSD|1|3|G|674
7SSD|1|3|A|675
7SSD|1|3|A|676
7SSD|1|3|U|677
*
7SSD|1|3|G|713
7SSD|1|3|G|714
7SSD|1|3|A|715
7SSD|1|3|A|716
7SSD|1|3|U|717
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain K
- 30S ribosomal protein S6
- Chain P
- 30S ribosomal protein S11
- Chain W
- 30S ribosomal protein S18
- Chain Z
- 30S ribosomal protein S21
- Chain b
- 50S ribosomal protein L2
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