IL_7SSL_041

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

7SSL|1|1|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSL_041 not in the Motif Atlas

Geometric match to IL_7A0S_073

Geometric discrepancy: 0.243

The information below is about IL_7A0S_073

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

7SSL|1|1|G|1087
7SSL|1|1|A|1088
7SSL|1|1|A|1089
7SSL|1|1|A|1090
*
7SSL|1|1|U|1101
7SSL|1|1|C|1102

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain i

50S ribosomal protein L11