IL_7SSL_054

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAAGC*GUGAUG

Length

11 nucleotides

Bulged bases

7SSL|1|1|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSL_054 not in the Motif Atlas

Geometric match to IL_3BNN_006

Geometric discrepancy: 0.3189

The information below is about IL_3BNN_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25186.4

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

7SSL|1|1|U|1468
7SSL|1|1|A|1469
7SSL|1|1|A|1470
7SSL|1|1|G|1471
7SSL|1|1|C|1472
*
7SSL|1|1|G|1519
7SSL|1|1|U|1520
7SSL|1|1|G|1521
7SSL|1|1|A|1522
7SSL|1|1|U|1523
7SSL|1|1|G|1524

Current chains

Chain 1

23S rRNA

Nearby chains