IL_7SSL_064

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

7SSL|1|1|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSL_064 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1778

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7SSL|1|1|U|1712
7SSL|1|1|A|1713
7SSL|1|1|U|1714
7SSL|1|1|G|1715
7SSL|1|1|U|1716
7SSL|1|1|A|1717
7SSL|1|1|G|1718
*
7SSL|1|1|U|1742
7SSL|1|1|G|1743
7SSL|1|1|A|1744
7SSL|1|1|A|1745
7SSL|1|1|A|1746

Current chains

Chain 1

23S rRNA

Nearby chains