IL_7SSL_072

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSL_072 not in the Motif Atlas

Geometric match to IL_7A0S_071

Geometric discrepancy: 0.2446

The information below is about IL_7A0S_071

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_24886.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

12

Unit IDs

7SSL|1|1|G|1933
7SSL|1|1|C|1934
*
7SSL|1|1|G|1964
7SSL|1|1|C|1965
7SSL|1|1|A|1966
7SSL|1|1|C|1967

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA