IL_7SSL_111

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUAAC*GGG

Length

9 nucleotides

Bulged bases

7SSL|1|3|C|48, 7SSL|1|3|A|51

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSL_111 not in the Motif Atlas

Geometric match to IL_5J7L_003

Geometric discrepancy: 0.2146

The information below is about IL_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7SSL|1|3|C|47
7SSL|1|3|C|48
7SSL|1|3|U|49
7SSL|1|3|A|50
7SSL|1|3|A|51
7SSL|1|3|C|52
*
7SSL|1|3|G|359
7SSL|1|3|G|360
7SSL|1|3|G|361

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 8

Elongation factor G

Chain Q

30S ribosomal protein S12