IL_7SSL_126

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

7SSL|1|3|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSL_126 not in the Motif Atlas

Homologous match to IL_4LFB_016

Geometric discrepancy: 0.1418

The information below is about IL_4LFB_016

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

7SSL|1|3|U|375
7SSL|1|3|G|376
*
7SSL|1|3|U|387
7SSL|1|3|G|388
7SSL|1|3|A|389

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 8

Elongation factor G

Chain U

30S ribosomal protein S16