IL_7SSL_131

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGCUAACU*AGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSL_131 not in the Motif Atlas

Geometric match to IL_4KYY_002

Geometric discrepancy: 0.2868

The information below is about IL_4KYY_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7SSL|1|3|C|504
7SSL|1|3|G|505
7SSL|1|3|G|506
7SSL|1|3|C|507
7SSL|1|3|U|508
7SSL|1|3|A|509
7SSL|1|3|A|510
7SSL|1|3|C|511
7SSL|1|3|U|512
*
7SSL|1|3|A|539
7SSL|1|3|G|540
7SSL|1|3|G|541

Current chains

Chain 3

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S4

Chain Q

30S ribosomal protein S12