IL_7SSL_135

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUU*AGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSL_135 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.2309

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7SSL|1|3|G|588
7SSL|1|3|U|589
7SSL|1|3|U|590
*
7SSL|1|3|A|649
7SSL|1|3|G|650
7SSL|1|3|C|651

Current chains

Chain 3

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S8

Chain T

30S ribosomal protein S15