IL_7SSL_147

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

7SSL|1|3|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSL_147 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.3225

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

7SSL|1|3|G|922
7SSL|1|3|A|923
7SSL|1|3|C|924
*
7SSL|1|3|G|1392
7SSL|1|3|U|1393
7SSL|1|3|A|1394
7SSL|1|3|C|1395

Current chains

Chain 3

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S5