IL_7SSL_148

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGG*UUG

Length

7 nucleotides

Bulged bases

7SSL|1|3|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SSL_148 not in the Motif Atlas

Geometric match to IL_4V88_465

Geometric discrepancy: 0.2304

The information below is about IL_4V88_465

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7SSL|1|3|C|924
7SSL|1|3|G|925
7SSL|1|3|G|926
7SSL|1|3|G|927
*
7SSL|1|3|U|1390
7SSL|1|3|U|1391
7SSL|1|3|G|1392

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 4

mRNA

Chain J

30S ribosomal protein S5